Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908607.1_cds_XP_016458768.1_52362
CDS Infomation

[gene=LOC107782396] [db_xref=GeneID:107782396] [protein=probable E3 ubiquitin-protein ligase ARI2] [protein_id=XP_016458768.1] [location=complement(join(149879..149987,150992..151377,151415..151571,152719..153199,153648..153927,154016..154048,155005..155130))] [gbkey=CDS]
Sequence

ATGGAGGACGGCAGTGTGTATGGGAGCAGTGATGATGAATTTTACAATGATGAAGAATCG
CTTGATGGGTTTACACAAGTTGAAGTAGAGAGTGATGGAGTCTGTCAAAATCCTCCTTCA
TGCAAGGTAATCAGGAAAGAGTCCCTTTTAGCTGCACAGAAAGAAGACTTGCAAAGAGTG
ATGGACTTGCTATCTCTGAAGGAGCATCATGCACGAAGCTTGCTTATTCATTATCGATGG
GATGCTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGAGAGATAAGTTATATGCTGAA
GCGGGTGTGACACTGGAAGGAAAAGATGATCATTGTTCCACTCTGTCGACAACTGAAATG
ACATGTCAAATTTGCTTCGAAGATGCCCCTGCTGAGAAGACTGCTGCAATGGACTGCAAC
CATAGATTTTGCAATGATTGTTGGACAACTCATTTCATTGTAAAGATAAATGAGGGTAAG
AGTAAACGAATAACATGCATGGCCCAAAAGTGCAATGCAATCTGTGATGAAGGAAAGATT
AGGGATCTCGTTACTGCAAAAGATCCTACTTTGGCCGAGAAATTTGATCGTTTTCTGCTA
GAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCAAGTGTTCCTCATTGTGGA
AATGCAATTCGTATTGAGGATGATGAATACTGCGAGGTTGAATGTGCTTGTGGCGTACAG
TTTTGTTTTAATTGTTTATCTGAAGTGCACTCACCTTGTTCATGTCTGATGTGGGAACTT
TGGATGAGGAAGTGCAAGGAGGATTCAAAGACGGTAATTTGGATAACTGAAAATGCCAAA
CATTGCCCAAAATGTCATAATCTTGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGT
ATATGTGGACAGCCATTTTGTTGGTTGTGTGGTGGAGCTACTGGTTTAGAACACACATGG
ACTAGCATTCGAGGTCACACTTGTGGCAGTTACAAAGAAGGGCAAGAGCAAAAGACGACC
GTCAACAATCTCTTACGCTTTACTCACTATTATGAGCGCTATGTGGCTCATTTTGATTCA
TTGAAGGTTGAAGCAGACATGAAACAAAAGCTACATGTAAAAGTCTTGAAACTTGAATCG
ACAGAATTGCAATCAAAGGACTTCAGCTGGGCAGAAAATGGATTTAATAGACTCCTTCAA
TCAAGACGGGTCCTCTCCTGTTCCTATCCAGTTGCATTTTACATATTTGGTAAGGCGCTG
TTTGAGAACGAAATGACACCAAAAGAAAAAGAAATAAAGCAGAACCTTTTTGAGAACCTG
CAGCAGCAACTTGAAATAAATGTTGAAAGACTTTCAATGTTCTTGGAAGAGCCATTTGCT
GACTATCCTGAAGATAAGCTTTTGGAGACTAGAATGAAGATCATCACTCTCTCTGCAGTA
ACTGACAACCTCTGCAAAAAGTTGTATGATTGCATTGACAACGATTTGCTGGTTCCTCTA
CAGCAGGCAACTCACACCATAGCTCATTATAGATCCAACGGAGTGGATAAAGCATCAGAA
CTTCCTAATTGA

Peptide Sequence

PEP ID

XP_016458768.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Nicotiana tabacum]
Sequence

MEDGSVYGSSDDEFYNDEESLDGFTQVEVESDGVCQNPPSCKVIRKESLLAAQKEDLQRV
MDLLSLKEHHARSLLIHYRWDADKVFAVLVERGRDKLYAEAGVTLEGKDDHCSTLSTTEM
TCQICFEDAPAEKTAAMDCNHRFCNDCWTTHFIVKINEGKSKRITCMAQKCNAICDEGKI
RDLVTAKDPTLAEKFDRFLLESYIDDNKRVKWCPSVPHCGNAIRIEDDEYCEVECACGVQ
FCFNCLSEVHSPCSCLMWELWMRKCKEDSKTVIWITENAKHCPKCHNLVEKNGGCNLVRC
ICGQPFCWLCGGATGLEHTWTSIRGHTCGSYKEGQEQKTTVNNLLRFTHYYERYVAHFDS
LKVEADMKQKLHVKVLKLESTELQSKDFSWAENGFNRLLQSRRVLSCSYPVAFYIFGKAL
FENEMTPKEKEIKQNLFENLQQQLEINVERLSMFLEEPFADYPEDKLLETRMKIITLSAV
TDNLCKKLYDCIDNDLLVPLQQATHTIAHYRSNGVDKASELPN

Transcript Sequence

Gene sequence data has not been registered.